2023

Hao Leng#, Yinzhao Wang#, Weishu Zhao, Stefan M. Sievert & Xiang Xiao *. (2023). Identification of a deep-branching thermophilic clade sheds light on early bacterial evolution. Nature Communications, 14(1), 4354.
Jason L. Vailionis, Weishu Zhao, Ke Zhang, Dmitry A. Rodionov, Gina L. Lipscomb, Tania N. N. Tanwee, Hailey C. O'Quinn, Ryan G. Bing, Robert M. Kelly, Michael W. W. Adams, Ying Zhang*. (2023). Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus. Applied and Environmental Microbiology, e00563-23.
Jiakang Li, Xiang Xiao, Meng Zhou, Yu Zhang*. (2023). Strategy for the Adaptation to Stressful Conditions of the Novel Isolated Conditional Piezophilic Strain Halomonas titanicae ANRCS81. Applied and Environmental Microbiology, 89(3), e01304-22.
Jiakang Li,Zhuo-Yi Zhu,Zhifeng Yang,Weiyi Li Yongxin Lv,Yu Zhang* (2023). Soil microorganisms and methane emissions in response to short-term warming field incubation in Svalbard. Frontiers in Microbiology, 14.
Jialin Hou, Yinzhao Wang*, Pengfei Zhu, Na Yang, Lewen Liang, Tiantian Yu, Mingyang Niu, Kurt Konhauser, BEn j. Woodcroft & Fengping Wang*. (2023). Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment. Science Advances, 9(27), eadf5069.
Jiaming Zhou, Liang Dong*. (2024). Molecular dynamics simulations reveal methylation in Me-GDGTs as a microbial low-temperature adaptation. Chemical Geology, 121844.
Jiaming Zhou, Xiaoxiao Zhao, Xin Chen, Liang Dong*. (2023). Comparing extraction methods for analyzing n-alkyl lipids in shelf sediments from the China Sea. Organic Geochemistry, 183, 104645.
Jianxun Shen, Greig A Paterson, Yinzhao Wang, Joseph L Kirschvink, Yongxin Pan, Wei Lin*. (2023). Renaissance for magnetotactic bacteria in astrobiology. The ISME Journal, 17(10), 1526-1534.
Linhao Cui, Kelei Zhu, Ruiyun Li, Chao Chang, Laiyuan Wu, Wei Liu, Dongjing Fu, Peiyu Liu, Hao Qiu, Guoqiang Tang, Qiuli Li, Robert R. Gaines, Yuxin Tao, Yinzhao Wang*, Jinhua Li* & Xingliang Zhang*. (2024). The Cambrian microfossil Qingjiangonema reveals the co-evolution of sulfate-reducing bacteria and the oxygenation of Earth’s surface. Science Bulletin, in press.
Liuyang Li, Danyue Huang, Yaoxun Hu, Nicola M. Rudling, Daniel P. Canniffe, Fengping Wang* & Yinzhao Wang*. (2023). Globally distributed Myxococcota with photosynthesis gene clusters illuminate the origin and evolution of a potentially chimeric lifestyle. Nature communications, 14(1), 6450.
Longhui Deng*, Annika Fiska, Damian Bölsterli, Dimitri Meier, Christof Meile & Mark Alexander Lever*. (2023). Differential impact of two major polychaete guilds on microbial communities in marine sediments: a microcosm study. Frontiers in Marine Science, 10, 1119331.
Mingyang Niu, Longhui Deng, Lei Su, S. Emil Ruff, Na Yang, Min Luo, Qi Qi, Jiangtao Li, Fengping Wang*. (2023). Methane supply drives prokaryotic community assembly and networks at cold seeps of the South China Sea. Molecular Ecology, 32(3), 660-679.
Mujie Zhang, Yali Hao, Yi Yi, Shunzhang Liu, Qingyang Sun, Xiaoli Tan, Shan Tang, Xiang Xiao & Huahua Jian*. (2023). Unexplored diversity and ecological functions of transposable phages. The ISME Journal, 1-14.
Niroshan Gajendra*, Jasmine S. Berg , Hendrik Vogel, Longhui Deng, Sarah M. Wolf, Stefano M. Bernasconi, Nathalie Dubois, Carsten J. Schubert & Mark A. Lever* (2023). Carbohydrate compositional trends throughout Holocene sediments of an alpine lake (Lake Cadagno). Frontiers in Earth Science, 11, 1047224..
Outongyi Lv, Bingxin Zhou, Jing Wang, Xiang Xiao, Weishu Zhao, Lirong Zheng*. (2023). A unified view on neural message passing with opinion dynamics for social networks. arXiv preprint arXiv:2310.01272.
Sarah P. Esser, Janina Rahlff, Weishu Zhao, Michael Predl, Julia Plewka, Katharina Sures, Franziska Wimmer, Janey Lee, Panagiotis S. Adam, Julia McGonigle, Victoria Turzynski, Indra Banas, Katrin Schwank, Mart Krupovic, Till L. V. Bornemann, Perla Abigail Figueroa-Gonzalez, Jessica Jarett, Thomas Rattei, Yuki Amano, Ian K. Blaby, Jan-Fang Cheng, William J. Brazelton, Chase L. Beisel, Tanja Woyke, Ying Zhang & Alexander J. Probst*. (2023). A predicted CRISPR-mediated symbiosis between uncultivated archaea. Nature Microbiology, 8(9), 1619-1633.
Sidra Erum Ishaq, Tariq Ahmad, Lewen Liang, Jialin Hou, Yijing Dong, Tiantian Yu & Fengping Wang*. (2023). Mariluticola halotolerans gen. nov., sp. nov., a novel member of the family Devosiaceae isolated from South China Sea sediment. International Journal of Systematic and Evolutionary Microbiology, 73(7), 005972.
Tiantian Yu#, Haining Hu#, Xianhong Zeng#, Yinzhao Wang, Donald Pan, Longhui Deng, Lewen Liang,Jialin Hou & Fengping Wang*.(2023). Widespread Bathyarchaeia encode a novel methyltransferase utilizing lignin-derived aromatics. mLife.; 2: 272–282.
Tiantian Yu, Weichao Wu, Wenyue Liang, Yinzhao Wang, Jialin Hou, Yunru Chen, Marcus Elvert, Kai-Uwe Hinrichs & Fengping Wang*. (2023). Anaerobic degradation of organic carbon supports uncultured microbial populations in estuarine sediments. Microbiome, 11(1), 81.
Ting Chu, Junjun Shang, Huahua Jian, Chunyan Song, Ruiheng Yang, Dapeng Bao, Qi Tan, Lihua Tang*. (2023). Potential role of Lysine acetylation and autophagy in brown film formation and Postripening of Lentinula edodes Mycelium. Microbiology Spectrum, 11(4): e02823-22.
Wenshen Xiao*, Leonid Polyak, Taoliang Zhang, Rujian Wang, Xiao Duan, Yan Tu, Yangqing Hu, Yanyan Pan. (2024) Depositional and circulation changes at the Chukchi margin, Arctic Ocean, during the last two glacial cycles. Global and Planetary Change, 233, 104366.
Wenyue Liang, Tiantian Yu, Liang Dong, Zhongjun Jia & Fengping Wang*. (2023). Determination of carbon-fixing potential of Bathyarchaeota in marine sediment by DNA stable isotope probing analysis. Science China Earth Sciences, 66(4), 910-917.
Xin Chen, Weishu Zhao, Liang Dong, Huahua Jian, Lewen Liang, Jing Wang, and Fengping Wang*. (2023). Impact of metabolism and temperature on ²H/¹H fractionation in lipids of marine bacterium Shewanella piezotolerans WP3. Biogeosciences, 1-22.
Xipeng Liu, Youli Zheng, Jialuo Li, Xinxin Chen, Anling Lou and Fengsong Cong*. (2023) Expression, Purification and Characterization of RecJ Nuclease -An Integrated Biochemistry Laboratory Course for Undergraduates. Biomedical Journal of Scientific & Technical Research. 41743-41749.
Yi Yang, Hao Leng, Qilian Fan, Xiang Xiao, Weishu Zhao*. (2023). Thermococcus thermotolerans sp. nov., a hyperthermophilic archaeon isolated from a chimney in the Southwest Indian Ocean. International Journal of Systematic and Evolutionary Microbiology, 73(12), 005934.
Yi Yi, Shunzhang Liu, Yali Hao, Qingyang Sun, Xinjuan Lei, Yecheng Wang, Jiahua Wang, Mujie Zhang, Shan Tang, Qingxue Tang, Yue Zhang, Xipeng Liu, Yinzhao Wang, Xiang Xiao & Huahua Jian*. (2023). A systematic analysis of marine lysogens and proviruses. Nature Communications, 14(1), 6013.
Yongqin Liu, Nianzhi Jiao, Kevin Xu Zhong, Lin Zang, Rui Zhang, Xiang Xiao, Yi Shi, Zhihao Zhang, Ye Tao, Liping Bai, Bianli Gao, Yunlan Yang, Xingyu Huang, Mukan Ji, Junzhi Liu, Pengfei Liu, Tandong Yao *. (2023). Diversity and function of mountain and polar supraglacial DNA viruses. Science Bulletin, 68(20), 2418-2433.
Youcheng Yin, Jingru Shi, Likui Zhang*, Qing Liu, Yong Gong, Philippe Oger, Xipeng Liu*. (2023) Biochemical and mutational studies of an endonuclease V from the hyperthermophilic crenarchaeon Sulfolobus islandicus REY15A.World Journal of Microbiology & Biotechnology. 39(4):90.
Yunge Jing, Ben Zhu, Taoliang Zhang, Jingtao Zhao*, Xiaoxiao Zhao, Yanguang Dou, Qing Li, Feng Cai, Bangqi Hu, Liang Dong*. (2024). Organic Carbon Burial and their implication on Sea Surface Primary Productivity in the Middle Okinawa Trough over the Past 200 ka. Frontiers in Marine Sciences. 11, 1331940.
Yunru Chen, Weikang Sui, Jing Wang, Ding He, Liang Dong, Joanna J. Waniek & Fengping Wang*. (2023). Refractory humic-like dissolved organic matter fuels microbial communities in deep energy-limiting marine sediments. Science China Earth Sciences, 66(8), 1738-1756.
Zheng Jin, Dong Song, Wei-Wei Wang, Lei Feng, Zheng-Xin Li, Hai-Feng Chen, Xiang Xiao, Xi-Peng Liu*. (2023). Synthesis and degradation of the cyclic dinucleotide messenger c‐di‐AMP in the hyperthermophilic archaeon Pyrococcus yayanosii. Protein Science, 32(12), e4829.
Zhihao Zhang, Yongqin Liu, Weishu Zhao & Mukan Ji*. (2023). Radiation impacts gene redundancy and biofilm regulation of cryoconite microbiomes in Northern Hemisphere glaciers. Microbiome, 11(1), 228.
范启连, 田琛, 吕永新, 张宇, 肖湘*. (2023). 南极纳尔逊冰川土壤中微生物的群落结构及其代谢特征研究. 应用海洋学学报, 42(2), 187-194.
郝亚丽, 许冠鹏, 肖湘, 蹇华哗*. (2023). 丝状病毒——被忽视的原核生物病毒"潜伏者". 中国科学:生命科学, 53(5), 672-685.
梁乐文, 侯佳林, 隋维康, 李思翰, 王风平*. (2023). 海洋沉积物微生物介导有机碳转化研究进展. 微生物学报, 63(5), 1771-1786.
王景，赵维殳，肖湘*. 大数据时代的深渊微生物研究. （2023）生命科学, 35(12):1630-1638.
赵维殳, 肖湘*. (2023). 深海热液区微生物群落与环境适应性机理. 中国科学:生命科学, 53(5), 660-671.