2022

Weishu Zhao^#, Bozitao Zhong^#, Pan Tan, Lirong Zheng, Yinzhao Wang, Hao Leng, Nicolas de Souza, Liang Hong*, Xiang Xiao* (2022). Proteome-wide 3D structure prediction provides insights into the ancestral metabolism of ancient archaea and bacteria. Nature Communications, 13, 7861. https://doi.org/10.1038/s41467-022-35523-8
Yongqin Liu^#, Zhihao Zhang^#, Mukan Ji, Aoran Hu, Jing Wang, Hongmei Jing, Keshao Liu, Xiang Xiao*, Weishu Zhao* (2022). Comparison of prokaryotes between Mount Everest and the Mariana Trench. Microbiome, 10, 215. https://doi.org/10.1186/s40168-022-01403-y
Yongxin Lv, Shanshan Yang, Xiang Xiao*, Yu Zhang* (2022). Stimulated organic carbon cycling and microbial community shift driven by a simulated cold-seep eruption. mbio, 13(2), e00087-22. https://doi.org/10.1128/mbio.00087-22
Qinying Huang^#, Dong Song^#, Weiwei Wang^#, Li Peng, Haifeng Chen, Xiang Xiao*, Xipeng Liu* (2022). Mechanism Underlying the Bypass of Apurinic/Pyrimidinic Site Analogs by Sulfolobus acidocaldarius DNA Polymerase IV. International journal of molecular sciences, 23(5), 2729. https://doi.org/10.3390/ijms23052729
Zhenghua Liu, Qingyun Yan, Chengying Jiang, Juan Li, Huahua Jian, Lu Fan, Rui Zhang, Xiang Xiao, Delong Meng, Xueduan Liu, Jianjun Wang*, Huaqun Yin* (2022). Growth rate determines prokaryote-provirus network modulated by temperature and host genetic traits. Microbiome, 10, 92. https://doi.org/10.1186/s40168-022-01288-x
Jiulong Zhao, Hongmei Jing, Zengmeng Wang, Long Wang, Huahua Jian, Rui Zhang, Xiang Xiao, Feng Chen, Nianzhi Jiao, Yongyu Zhang* (2022). Novel viral communities potentially assisting in carbon, nitrogen, and sulfur metabolism in the upper slope sediments of mariana trench. Msystems, 7(1), e01358-21. https://doi.org/10.1128/msystems.01358-21
Yali Hao，Siyuan Wang, Mujie Zhang, Qingxue Tang, Canxing Meng, Liping Wang, Qilian Fan, Yaxian Yan, Xiang Xiao, Huahua Jian* (2022). Isolation and characterization of a novel linear-plasmid phage from the sediment of the Mariana Trench. Virologica Sinica, 37(2), 311. http://dx.doi.org/10.1016/j.virs.2022.01.022
Na Yang, Chen Tian, Yongxin Lv, Jialin Hou, Zhifeng Yang, Xiang Xiao, Yu Zhang* (2022). Novel primers for 16S rRNA gene-based archaeal and bacterial community analysis in oceanic trench sediments. Applied Microbiology and Biotechnology, 106(7), 2795-2809. https://doi.org/10.1007/s00253-022-11893-3
Ye Lu, Yu Zhang, Jiahua Wang, Miao Zhang, Ying Wu, Xiang Xiao，Jun Xu* (2022). Dynamics in bacterial community affected by mesoscale eddies in the northern slope of the South China Sea. Microbial Ecology, 83(4), 823-836. https://doi.org/10.1007/s00248-021-01816-6
Hongmei Jing*, Xiang Xiao, Yue Zhang, Zhiyong Li, Huahua Jian, Yingfeng Luo, Zhuang Han (2022). Composition and ecological roles of the core microbiome along the abyssal-hadal transition zone sediments of the Mariana Trench. Microbiology Spectrum, e01988-21. https://doi.org/10.1128/spectrum.01988-21
Hao Leng, Weishu Zhao, Xiang Xiao* (2022). Cultivation and metabolic insights of an uncultured clade, Bacteroidetes VC2.1 Bac22 (Candidatus Sulfidibacteriales ord. nov.), from deep-sea hydrothermal vents. Environmental Microbiology, 24, 2484-2501. https://doi.org/10.1111/1462-2920.15931
Jiakang Li, Yu Zhang, Yongxin Lv, Xiang Xiao* (2022). Isolation and characterization of piezotolerant fungi from Mariana Trench sediment. Deep Sea Research Part I: Oceanographic Research Papers, 190, 103873. https://doi.org/10.1016/j.dsr.2022.103873
Ye Lu, Yongxin Lv, Yu Zhang, Qian Liu, Xuewei Xu, Xiang Xiao, Jun Xu* (2022). Metatranscriptomes reveal the diverse responses of Thaumarchaeota ecotypes to environmental variations in the northern slope of the South China Sea. Environmental Microbiology, 1-18. https://doi.org/10.1111/1462-2920.16289
Muhammad Zohaib Nawaz, Fengping Wang* (2022). Meta-omics approaches reveal unique small RNAs exhibited by the uncultured microorganisms dwelling deep-sea hydrothermal sediment in Guaymas Basin. Archives of Microbiology, 204(8), 461. https://doi.org/10.1007/s00203-022-03085-4
Lewen Liang, Yu Sun, Yijing Dong, Tariq Ahmad, Yifan Chen, Jing Wang, Fengping Wang*. (2022). Methanococcoides orientis sp. nov., a methylotrophic methanogen isolated from sediment of the East China Sea. Microbiology Society, 72(5), 005384. https://doi.org/10.1099/ijsem.0.005384
Lewen Liang, Hanni Vigderovich, Orit Sivan, Jialin Hou, Mingyang Niu, Omer Yorshansky, Taoliang Zhang, Alice Bosco-Santos, Fengping Wang* (2022). Iron (oxyhydr)oxides shift the methanogenic community in deep sea methanic sediment-insights from long-term high-pressure incubations. Science of the Total Environment, 848, 157590. https://doi.org/10.1016/j.scitotenv.2022.157590
Xin Chen, Liang Dong, Weishu Zhao, Huahua Jian, Jing Wang, Fengping Wang* (2022). The effects of metabolism and temperature on carbon isotope composition of lipids in marine bacterium Shewanella piezotolerans WP3. Chemical Geology, 606, 120963. https://doi.org/10.1016/j.chemgeo.2022.120963
Sidra Erum Ishaq, Tariq Ahmad, Jialin Hou, Lewen Liang, Yinzhao Wang, Fengping Wang* (2022). Draft genome sequences of four bacterial strains isolated from sediment of the South China Sea. Microbiology Resource Announcements, 11(5), e0019122. https://doi.org/10.1128/mra.00191-22
Keith Dufault-Thompson, Chang Nie, Huahua Jian, Fengping Wang*, Ying Zhang* (2022). Reconstruction and analysis of thermodynamically constrained models reveal metabolic responses of a deep-sea bacterium to temperature perturbations. Msystems. 7(4), e0058822. https://doi.org/10.1128/msystems.00588-22
Zhenbo Lv, Jiaxin Ding, Heng Wang, Jiaxin Wan, Yifan Chen, Lewen Liang, Tiantian Yu, Yinzhao Wang*, Fengping Wang (2022). Isolation of a novel thermophilic methanogen and the evolutionary history of the class Methanobacteria. Biology, 11(10), 1514. https://doi.org/10.3390/biology11101514
Omer Yorshansky, Lewen Liang, Andre Pellerin, Fengping Wang, Barak Herut, Orit Sivan*. (2022). Iron oxides impact sulfate driven anaerobic oxidation of methane in diffusion-dominated marine sediments. Frontiers in Marine Science, 1701. https://doi.org/10.3389/fmars.2022.903918
Yinzhao Wang*, Ruize Xie, Jialin Hou, Zhenbo Lv, Liuyang Li, Yaoxun Hu, Hungchia Huang, and Fengping Wang* (2022). The late Archaean to early Proterozoic origin and evolution of anaerobic methane-oxidizing archaea. mLife, 1, 96-100. https://doi.org/10.1002/mlf2.12013
Chen Tian, Yongxin Lv, Zhifeng Yang, Ruifeng Zhang, Zhuoyi Zhu, Hongmei Ma, Jing Li, Yu Zhang* (2022). Microbial community structure and metabolic potential at the initial stage of soil development of the glacial forefields in Svalbard. Microbial Ecology. https://doi.org/10.1007/s00248-022-02116-3
Lihua Tang^#, Ting Chu^#, Junjun Shang, Ruiheng Yang, Chunyan Song, Dapeng Bao*, Qi Tan*, Huahua Jian*(2022). Oxidative stress and autophagy are important processes in post ripeness and brown film formation in Mycelium of Lentinula edodes. Frontiers in Microbiology, 13, 811673. https://doi.org/10.3389/fmicb.2022.811673
Xu Qiu, Xiaorong Cao, Huahua Jian, Huangming Wu, Guangxin Xu, Xixiang Tang* (2022). Transcriptomic analysis reveals that changes in gene expression contribute to Microbacterium sediminis YLB-01 adaptation at low temperature under high hydrostatic pressure. Current Microbiology, 79:95. https://doi.org/10.1007/s00284-022-02786-9
Weiwei Wang^#, Huan Zhou^#, Li Peng^#, Feng Yu, Qin Xu, Qisheng Wang^*, Jianhua He^*, Xipeng Liu^* (2022). Translesion synthesis of apurinic/apyrimidic site analogues by Y-Family DNA polymerase Dbh from Sulfolobus acidocaldarius. Acta Biochimica et Biophysica Sinica, 54(5), 637-646. https://doi.org/10.3724/abbs.2022045
Hui Yuan^#, You Wang^#, Xipeng Liu* (2022). The thumb subdomain of Pyrococcus furiosus DNA polymerase is responsible for deoxyuracil binding, hydrolysis and polymerization of nucleotides. The International Journal of Biochemistry & Cell Biology. 144, 106171. https://doi.org/10.1016/j.biocel.2022.106171
Miao Chen^#, Xiaoxiao Zhao^#, Dawei Li, Liang Dong* (2022). Mesoscale eddy effects on nitrogen cycles in the northern South China Sea since the last glacial. Frontiers in Earth Science, 815. https://doi.org/10.3389/feart.2022.886200
Long Wang, Yinzhao Wang, Xingyu Huang, Ruijie Ma, Jiangtao Li, Fengping Wang, Nianzhi Jiao, Rui Zhang* (2022). Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners. ISME Communications, 2, 1-10. https://doi.org/10.1038/s43705-022-00135-2
赵维殳, 肖湘 (2022). 深海热液区微生物群落与环境适应性机理（综述）, 中国科学: 生命科学, 52. http://kns.cnki.net/kcms/detail/11.5840.Q.20220517.1606.002.html
孙瑜, 牛明杨, 刘俏, 庄光超. 王风平*. (2022). 南海 Formosa 冷泉区沉积物微生物多样性与分布规律研究. 微生物学报, 62(6), 2001–2020. http://kns.cnki.net/kcms/detail/detail.aspx?doi=10.13343/j.cnki.wsxb.20220345
张宇 (2022). 环境模拟技术与原位试验技术在深海生物研究中的应用与展望. 前瞻科技, 1, 11. www.163.com/dy/article/HG1JCNG20511DC8A.html
郝亚丽，许冠鹏，肖湘，蹇华哗* (2022). 丝状病毒-被忽视的原核生物病毒“潜伏者”. 中国科学：生命科学. http://kns.cnki.net/kcms/detail/11.5840.Q.20220130.0919.002.html